Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
total RNA-seq
119
single cell RNA-seq
90
ATAC-seq
61
snATAC-seq
41
ChIP-seq
17
pCHi-C
10
MeRIP-seq
8
Hi-C
6
WGBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
162
Transcription
Date released
81
February, 2023
59
August, 2021
May, 2022
16
September, 2020
6
May, 2021
Available data
106
tsv
bigWig
96
bam
92
fastq
49
txt
2
bed bed3+
Organism
162
Homo sapiens
Biosample type
92
primary cell
56
tissue
9
cell line
5
in vitro differentiated cells
Organ
60
pancreas
53
epithelium
49
kidney
9
liver
Project
92
HPAP
65
AMP
5
T1D
Lab
92
Klaus Kaestner, Upenn
AMP-T2D consortium
49
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
162 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
kidney
49
islet of Langerhans
6
pancreas
1
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
Download