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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
52
single cell RNA-seq
35
snATAC-seq
16
pCHi-C
6
WGBS
4
Hi-C
Assay category
144
Transcription
35
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
May, 2022
76
February, 2023
56
September, 2020
45
February, 2021
16
May, 2021
8
January, 2021
3
October, 2022
1
March, 2023
Available data
bigWig
180
bam
169
fastq
114
bed narrowPeak
102
tsv
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
Organism
205
Homo sapiens
Biosample type
247
tissue
205
primary cell
44
in vitro differentiated cells
33
cell line
2
stem cell
Organ
62
epithelium
62
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
180
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
180
Klaus Kaestner, Upenn
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
205 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
6
1
exocrine cell
39
pancreatic beta cell
11
1
peripheral blood mononuclear cell
8
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