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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
6
MeRIP-seq
6
WGBS
3
Hi-C
Assay category
53
Transcription
6
DNA methylation
3
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
May, 2022
37
February, 2023
16
September, 2020
6
February, 2021
6
November, 2020
3
October, 2022
Available data
69
fastq
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
68
Homo sapiens
Biosample type
62
primary cell
6
cell line
Organ
191
kidney
106
pancreas
68
epithelium
19
lung
17
liver
8
blood
8
bodily fluid
3
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
62
HPAP
6
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
62
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
3
audit script error
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
month_released!
May, 2022
BIOSAMPLE
ASSAY
68 results
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total RNA-seq
MeRIP-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
42
6
1
pancreatic beta cell
11
1
pancreatic acinar cell
1
cell line
EndoC_BH1
6
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