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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
47
DNA accessibility
37
DNA binding
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
54
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
132
bed narrowPeak
bigWig
102
bam
84
tagAlign
18
fastq
Organism
106
Homo sapiens
Biosample type
40
tissue
37
in vitro differentiated cells
24
primary cell
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
55
AMP
51
T1D
Genome assembly (visualization)
18
hg19
Lab
992
AMP-T2D consortium
222
Klaus Kaestner, Upenn
106
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
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