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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
2
ATAC-seq
Assay category
92
DNA binding
2
DNA accessibility
Target of assay
88
control
4
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
46
November, 2017
23
May, 2020
13
December, 2017
8
August, 2017
1
August, 2021
1
February, 2021
1
November, 2018
1
October, 2019
Available data
674
bam
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
167
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
94
Homo sapiens
Biosample type
48
cell line
43
tissue
2
primary cell
1
in vitro differentiated cells
Organ
94
liver
88
pancreas
31
blood vessel
31
connective tissue
31
vasculature
30
epithelium
28
heart
25
brain
23
limb
20
adipose tissue
17
artery
13
kidney
11
nerve
8
bone element
8
embryo
8
skeleton
8
spleen
6
blood
6
bodily fluid
5
vein
3
musculature of body
1
eye
Project
94
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
47
1
tissue
liver
40
right lobe of liver
3
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
in vitro differentiated cells
hepatocyte
1
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