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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
21
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
13
control
8
histone
8
histone modification
5
broad histone mark
3
narrow histone mark
Date released
November, 2017
12
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
165
bam
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
39
Homo sapiens
Biosample type
38
tissue
1
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
122
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
56
artery
55
eye
39
brain
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
39
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
November, 2017
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
9
1
1
Ammon's horn
1
1
cerebellum (Hemisphere)
1
1
putamen
1
1
temporal lobe
2
+ See 19 more…
primary cell
choroid plexus epithelial cell
1
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