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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
snATAC-seq
18
single cell RNA-seq
13
ATAC-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
40
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
272
August, 2021
194
February, 2023
180
May, 2022
139
August, 2017
107
October, 2019
95
May, 2021
81
May, 2020
72
February, 2021
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
506
bam
501
tsv
bigWig
45
fastq
15
bed narrowPeak
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
72
Homo sapiens
Biosample type
46
primary cell
13
cell line
9
tissue
4
in vitro differentiated cells
Organ
bone element
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
5
connective tissue
3
liver
Project
45
HPAP
27
AMP
Genome assembly (visualization)
15
hg19
9
GRCh38
Lab
45
Klaus Kaestner, Upenn
27
AMP-T2D consortium
Audit category:
32
audit script error
1
inconsistent replicate
files.file_type!
bigWig
month_released!
October, 2017
organ_slims!
bone element
BIOSAMPLE
ASSAY
72 results
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Clear Filters
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
tissue
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
liver
1
in vitro differentiated cells
adipocyte
4
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