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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
pCHi-C
3
total RNA-seq
2
Hi-C
2
RRBS
2
WGBS
Assay category
96
Transcription
43
DNA accessibility
20
DNA binding
4
DNA methylation
2
3D chromatin structure
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
June, 2019
October, 2019
Available data
204
bam
bigWig
166
tsv
146
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
168
Homo sapiens
Biosample type
155
tissue
10
cell line
3
primary cell
Organ
313
pancreas
215
kidney
213
epithelium
168
heart
168
liver
113
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
54
brain
51
artery
34
eye
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
14
limb
9
spleen
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
168
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
168
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
168 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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