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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
7
DNA binding
5
DNA accessibility
Target of assay
7
control
Date released
5
December, 2017
4
February, 2023
2
August, 2017
2
August, 2021
2
February, 2021
September, 2017
1
May, 2022
Available data
3381
bam
bigWig
1812
bed narrowPeak
1600
tsv
1347
fastq
1037
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
11
in vitro differentiated cells
2
tissue
1
cell line
1
primary cell
1
stem cell
Organ
8
connective tissue
2
liver
1
embryo
1
musculature of body
Project
16
AMP
Genome assembly (visualization)
16
hg19
7
GRCh38
Lab
14
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
month_released!
September, 2017
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
liver
1
skeletal muscle tissue
1
cell line
HepG2
1
primary cell
osteoblast
1
stem cell
hESC
1
See all biosamples
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