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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
84
RNA microarray
27
snATAC-seq
21
ATAC-seq
18
single cell RNA-seq
13
WGBS
6
RRBS
3
snDrop-seq
2
pCHi-C
1
DNase-seq
Assay category
128
DNA binding
49
DNA accessibility
19
DNA methylation
18
Transcription
Target of assay
76
histone
76
histone modification
52
control
48
broad histone mark
28
narrow histone mark
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
854
bam
bigWig
648
tsv
332
fastq
165
bed narrowPeak
93
tagAlign
89
txt
42
bigBed narrowPeak
41
bed broadPeak
35
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
csv
4
bed bedgraph
2
bed bed3
Organism
302
Homo sapiens
Biosample type
207
tissue
59
primary cell
24
in vitro differentiated cells
13
cell line
Organ
92
bone element
65
connective tissue
40
adipose tissue
39
liver
35
pancreas
18
epithelium
13
musculature of body
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
limb
Project
258
AMP
45
HPAP
Genome assembly (visualization)
29
hg19
19
GRCh38
Lab
258
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bigWig
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
RRBS
snDrop-seq
pCHi-C
DNase-seq
tissue
bone element
84
subcutaneous abdominal adipose tissue
35
3
liver
31
1
3
1
islet of Langerhans
15
skeletal muscle tissue
9
4
+ See 15 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
6
pancreatic beta cell
6
osteoblast
1
skeletal muscle myoblast
1
in vitro differentiated cells
adipocyte
20
4
cell line
smooth muscle cell of the coronary artery
2
8
HepG2
1
1
iPSC derived cell line
1
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