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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
ATAC-seq
17
pCHi-C
10
MeRIP-seq
7
total RNA-seq
1
DNAme array
Assay category
42
DNA binding
30
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
11
control
5
RNA binding protein
5
nucleotide modification
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
283
bam
177
tsv
135
bed narrowPeak
90
tagAlign
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
107
Homo sapiens
Biosample type
43
in vitro differentiated cells
36
primary cell
22
cell line
6
tissue
Organ
28
pancreas
23
epithelium
2
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
90
AMP
17
T1D
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
60
Kyle Gaulton, UCSD
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
107 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
MeRIP-seq
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
primary cell
monocyte
1
13
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
B cell
1
+ See 11 more…
cell line
EndoC_BH1
16
6
tissue
islet of Langerhans
4
pancreas
1
thymus
1
See all biosamples
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