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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
29
ATAC-seq
17
pCHi-C
7
total RNA-seq
1
DNAme array
Assay category
30
DNA binding
29
DNA accessibility
7
Transcription
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
111
August, 2017
84
May, 2021
83
October, 2019
81
May, 2020
64
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
8
February, 2018
8
June, 2019
8
November, 2018
8
October, 2017
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
235
bam
173
tsv
81
bed narrowPeak
49
tagAlign
2
bed bed3+
Organism
84
Homo sapiens
Biosample type
33
in vitro differentiated cells
33
primary cell
16
cell line
2
tissue
Organ
18
pancreas
17
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
67
AMP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
50
Kyle Gaulton, UCSD
34
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
in vitro differentiated cells
embryonic stem cell
27
5
pancreatic PP cell
1
primary cell
monocyte
13
1
1
1
CD4-positive, alpha-beta T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
neutrophil
1
1
B cell
1
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cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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