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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
85
ChIP-seq
74
ATAC-seq
59
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
85
DNA binding
80
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
67
control
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
4
transcription factor
2
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
441
bam
419
bed narrowPeak
bigWig
324
fastq
312
bigBed narrowPeak
123
tsv
102
tagAlign
70
bed broadPeak
64
bigBed broadPeak
64
xls
57
txt
5
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
vcf
Organism
343
Homo sapiens
Biosample type
254
tissue
69
cell line
20
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
65
liver
25
brain
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
344
AMP
Genome assembly (visualization)
75
GRCh38
14
hg19
Lab
192
AMP-T2D consortium
128
Katalin Susztak, Upenn
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
344 results
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Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 17 more…
cell line
HepG2
51
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
10
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
See all biosamples
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