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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
26
ATAC-seq
16
total RNA-seq
2
ChIP-seq
2
Hi-C
Assay category
56
Transcription
26
DNA accessibility
2
3D chromatin structure
2
DNA binding
Target of assay
2
control
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
59
bam
41
fastq
37
bed narrowPeak
bigWig
20
tsv
19
zippedFastqFolder
2
bedpe bed3+
2
hic
Organism
86
Homo sapiens
Biosample type
56
primary cell
21
tissue
5
in vitro differentiated cells
4
cell line
Organ
40
pancreas
20
epithelium
1
adipose tissue
1
connective tissue
Project
56
HPAP
30
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
56
Klaus Kaestner, Upenn
30
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
86 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
tissue
islet of Langerhans
19
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cell line
EndoC_BH1
1
2
1
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