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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
40
single cell RNA-seq
29
ATAC-seq
23
total RNA-seq
17
pCHi-C
1
DNAme array
Assay category
63
Transcription
42
DNA binding
29
DNA accessibility
1
DNA methylation
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
5
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
bigWig
277
bam
173
tsv
133
bed narrowPeak
90
tagAlign
41
fastq
19
zippedFastqFolder
2
bed bed3+
Organism
152
Homo sapiens
Biosample type
91
primary cell
43
in vitro differentiated cells
16
cell line
2
tissue
Organ
34
pancreas
33
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
79
AMP
56
HPAP
17
T1D
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
60
Kyle Gaulton, UCSD
56
Klaus Kaestner, Upenn
36
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
152 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
pCHi-C
DNAme array
primary cell
Langerhans cell
40
monocyte
1
13
1
1
1
pancreatic alpha cell
15
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
+ See 13 more…
in vitro differentiated cells
embryonic stem cell
37
5
pancreatic PP cell
1
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
See all biosamples
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