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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
3
pCHi-C
1
ATAC-seq
1
RRBS
Assay category
4
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
3
June, 2019
1
February, 2021
1
July, 2019
1
March, 2020
1
May, 2021
1
November, 2020
1
October, 2019
Available data
92
bam
bigWig
72
tsv
17
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
9
Homo sapiens
Biosample type
in vitro differentiated cells
7
primary cell
1
stem cell
1
tissue
Organ
322
pancreas
223
kidney
219
epithelium
169
heart
168
liver
101
bone element
81
vasculature
80
blood vessel
74
connective tissue
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
8
AMP
1
T1D
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
adipose tissue
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
9 results
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ChIP-seq
pCHi-C
ATAC-seq
RRBS
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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