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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
4
ATAC-seq
2
Capture-C
2
pCHi-C
1
snATAC-seq
Assay category
9
DNA binding
5
DNA accessibility
Target of assay
9
control
Date released
5
December, 2017
4
February, 2023
2
August, 2017
2
August, 2021
2
February, 2021
2
September, 2017
1
May, 2022
Available data
2950
bam
bigWig
1804
bed narrowPeak
1314
fastq
1199
tsv
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
11
in vitro differentiated cells
4
tissue
1
cell line
1
primary cell
1
stem cell
Organ
8
connective tissue
2
liver
2
pancreas
1
embryo
1
musculature of body
Project
18
AMP
Genome assembly (visualization)
18
hg19
9
GRCh38
Lab
16
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
islet of Langerhans
2
liver
1
skeletal muscle tissue
1
cell line
HepG2
1
primary cell
osteoblast
1
stem cell
hESC
1
See all biosamples
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