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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
ATAC-seq
23
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
3
Hi-C
2
pCHi-C
1
RRBS
1
WGBS
Assay category
55
DNA accessibility
23
DNA binding
13
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
102
February, 2021
43
February, 2023
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
May, 2021
Available data
251
bam
bigWig
141
bed narrowPeak
126
tsv
88
txt
83
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
4
bed bed3
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
182
Homo sapiens
Biosample type
163
tissue
10
cell line
9
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
181
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
24
hg19
Lab
181
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
182 results
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RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
bone element
84
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
megakaryocyte
1
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