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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
Assay category
96
Transcription
20
DNA binding
4
DNA methylation
3
3D chromatin structure
Target of assay
20
control
Date released
92
August, 2021
10
April, 2019
6
May, 2019
5
March, 2020
4
July, 2019
3
February, 2020
2
February, 2021
2
June, 2019
1
February, 2023
1
October, 2019
Available data
98
tsv
20
bam
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
tagAlign
1
bed narrowPeak
bigWig
Organism
126
Homo sapiens
Biosample type
121
tissue
3
primary cell
2
cell line
Organ
299
pancreas
221
epithelium
166
liver
148
kidney
126
heart
110
connective tissue
bone element
64
adipose tissue
61
brain
55
eye
38
vasculature
37
blood vessel
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
skeleton
7
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
126
AMP
Genome assembly (visualization)
GRCh38
13
hg19
Lab
126
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
organ_slims!
bone element
assembly!
GRCh38
BIOSAMPLE
ASSAY
126 results
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single cell RNA-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
tissue
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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