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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
16
ATAC-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
43
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
269
August, 2021
183
February, 2023
180
May, 2022
158
February, 2021
106
October, 2019
95
May, 2021
81
May, 2020
79
August, 2017
72
November, 2017
56
September, 2020
47
September, 2023
42
March, 2020
29
November, 2019
23
February, 2020
23
May, 2019
22
December, 2017
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
11
October, 2018
10
November, 2020
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
June, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2022
1
September, 2018
Available data
121
bam
110
tsv
bigWig
89
txt
45
fastq
22
bed narrowPeak
8
tagAlign
6
csv
bed bed3
1
bed bed3+
Organism
158
Homo sapiens
Biosample type
101
tissue
45
primary cell
12
cell line
Organ
92
bone element
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
connective tissue
2
liver
Project
113
AMP
45
HPAP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
113
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
files.file_type!
bigWig
bed bed3
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
158 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
iPSC derived cell line
1
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