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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
30
total RNA-seq
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
ATAC-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
118
DNA binding
31
Transcription
3
3D chromatin structure
2
DNA accessibility
1
DNA methylation
1
DNA sequencing
Target of assay
93
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
33
August, 2017
24
May, 2020
20
May, 2022
17
August, 2021
12
December, 2017
3
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
654
bam
bigWig
448
fastq
422
bed narrowPeak
343
bigBed narrowPeak
169
tsv
82
tagAlign
62
bed broadPeak
62
bigBed broadPeak
8
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
161
Homo sapiens
Biosample type
92
tissue
69
cell line
Organ
276
pancreas
223
kidney
epithelium
167
heart
165
liver
110
connective tissue
101
bone element
80
vasculature
79
blood vessel
64
brain
62
adipose tissue
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
124
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
epithelium
assay_title!
WGBS
BIOSAMPLE
ASSAY
161 results
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ChIP-seq
total RNA-seq
Hi-C
pCHi-C
STARR-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
1
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
9
2
2
2
1
1
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