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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
12
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
80
DNA accessibility
12
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
control
1
broad histone mark
1
histone
1
histone modification
Date released
269
August, 2021
157
February, 2021
140
February, 2023
127
August, 2017
100
May, 2022
97
October, 2019
81
May, 2020
79
May, 2021
72
November, 2017
47
September, 2023
43
March, 2020
40
September, 2020
29
October, 2018
26
November, 2019
25
February, 2020
22
May, 2019
19
April, 2020
19
December, 2017
17
July, 2019
16
January, 2021
15
April, 2019
15
May, 2023
9
October, 2017
8
February, 2018
8
November, 2018
6
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
5
November, 2020
4
December, 2019
4
January, 2019
4
July, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
123
tsv
103
bed narrowPeak
64
xls
57
txt
45
bam
bigWig
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
268
Homo sapiens
Biosample type
229
tissue
20
cell line
20
in vitro differentiated cells
Organ
130
kidney
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
epithelium
2
artery
1
adipose tissue
Project
269
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
117
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
bed bed3
organ_slims!
epithelium
BIOSAMPLE
ASSAY
269 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
See all biosamples
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