Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
15
ATAC-seq
6
WGBS
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
42
DNA accessibility
18
Transcription
6
DNA methylation
3
DNA binding
Target of assay
3
control
Date released
272
August, 2021
202
February, 2023
180
May, 2022
158
February, 2021
139
August, 2017
96
May, 2021
90
October, 2019
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
22
May, 2019
19
April, 2020
19
July, 2019
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
566
bam
559
tsv
bigWig
89
txt
45
fastq
17
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
158
Homo sapiens
Biosample type
95
tissue
46
primary cell
13
cell line
4
in vitro differentiated cells
Organ
92
bone element
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
epithelium
limb
6
pancreas
5
connective tissue
3
liver
Project
113
AMP
45
HPAP
Genome assembly (visualization)
17
hg19
11
GRCh38
Lab
113
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bigWig
organ_slims!
limb
BIOSAMPLE
ASSAY
158 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
1
iPSC derived cell line
1
in vitro differentiated cells
adipocyte
4
See all biosamples
Download