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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
4
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
8
DNA binding
5
DNA accessibility
Target of assay
8
control
Date released
5
December, 2017
4
February, 2023
2
August, 2021
2
September, 2017
1
August, 2017
1
February, 2021
1
May, 2022
Available data
2711
bam
bigWig
1426
tsv
1336
bed narrowPeak
893
fastq
684
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
16
Homo sapiens
Biosample type
11
in vitro differentiated cells
3
tissue
1
primary cell
1
stem cell
Organ
8
connective tissue
liver
2
pancreas
1
embryo
1
musculature of body
Project
16
AMP
Genome assembly (visualization)
16
hg19
8
GRCh38
Lab
14
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
organ_slims!
liver
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
in vitro differentiated cells
adipocyte
1
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
tissue
islet of Langerhans
2
skeletal muscle tissue
1
primary cell
osteoblast
1
stem cell
hESC
1
See all biosamples
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