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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
ChIP-seq
17
pCHi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
180
DNA accessibility
58
DNA methylation
32
DNA binding
Target of assay
25
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
35
May, 2021
13
August, 2017
10
October, 2019
9
July, 2019
8
January, 2021
8
June, 2019
1
August, 2021
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
469
Homo sapiens
Biosample type
993
tissue
469
primary cell
138
cell line
131
in vitro differentiated cells
7
stem cell
Organ
170
epithelium
151
pancreas
8
blood
8
bodily fluid
8
kidney
7
connective tissue
6
vasculature
5
blood vessel
5
vein
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
1
brain
Project
311
HPAP
134
AMP
24
T1D
Genome assembly (visualization)
27
hg19
16
GRCh38
Lab
311
Klaus Kaestner, Upenn
134
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
audit script error
16
inconsistent ontology term
files.file_type!
bigWig
hic
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
469 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
pancreatic beta cell
13
11
16
6
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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