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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
268
ChIP-seq
182
ATAC-seq
168
single cell RNA-seq
133
total RNA-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
15
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
268
DNA binding
211
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
163
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
223
August, 2021
106
August, 2017
101
February, 2021
77
October, 2019
60
February, 2023
47
September, 2023
46
May, 2022
29
October, 2018
26
March, 2020
25
November, 2017
23
May, 2020
22
February, 2020
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
13
July, 2019
12
December, 2017
11
May, 2019
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
3
December, 2019
2
May, 2021
1
August, 2022
Available data
1796
bam
bigWig
1061
tsv
870
bed narrowPeak
486
bigBed narrowPeak
353
fastq
238
tagAlign
207
bed broadPeak
199
bed bed3+
170
bigBed broadPeak
157
txt
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
930
Homo sapiens
Biosample type
933
tissue
467
primary cell
135
in vitro differentiated cells
130
cell line
7
stem cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
838
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
112
GRCh38
107
hg19
Lab
642
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
vasculature
spleen
BIOSAMPLE
ASSAY
933 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
65
32
7
4
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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