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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
15
ChIP-seq
8
snATAC-seq
2
single cell RNA-seq
2
total RNA-seq
Assay category
51
DNA accessibility
15
DNA binding
4
Transcription
Target of assay
15
control
Date released
35
February, 2023
10
February, 2021
8
January, 2021
5
October, 2019
3
January, 2019
3
November, 2018
2
August, 2021
2
February, 2020
2
May, 2019
Available data
162
bam
bigWig
128
bed narrowPeak
79
bigBed narrowPeak
60
fastq
58
tsv
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
70
Homo sapiens
Biosample type
46
tissue
16
cell line
8
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigWig
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
tissue
coronary artery
35
2
1
tibial artery
5
1
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
8
2
GM12878
6
primary cell
peripheral blood mononuclear cell
8
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