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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
20
total RNA-seq
8
ChIP-seq
4
pCHi-C
2
single cell RNA-seq
1
RRBS
Assay category
28
DNA accessibility
22
Transcription
8
DNA binding
1
DNA methylation
Target of assay
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
26
October, 2019
2
August, 2021
2
February, 2020
1
July, 2019
1
June, 2019
Available data
54
bed narrowPeak
33
bam
bigWig
26
bigBed narrowPeak
8
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
63
Homo sapiens
Biosample type
61
tissue
2
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
28
hg19
Lab
63
AMP-T2D consortium
files.file_type!
bigWig
organ_slims!
heart
BIOSAMPLE
ASSAY
63 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
single cell RNA-seq
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
tibial artery
1
5
pulmonary artery
2
primary cell
retinal pigment epithelial cell
1
1
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