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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
45
ATAC-seq
32
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
3
single cell RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
129
DNA binding
46
DNA accessibility
35
Transcription
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
104
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
35
February, 2023
24
May, 2020
20
August, 2021
20
May, 2022
13
December, 2017
13
February, 2021
6
October, 2019
3
February, 2020
2
July, 2019
2
March, 2020
2
May, 2019
1
December, 2018
1
November, 2018
Available data
783
bam
bigWig
515
bed narrowPeak
465
fastq
383
bigBed narrowPeak
232
tsv
92
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
225
Homo sapiens
Biosample type
142
tissue
79
cell line
3
primary cell
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
225
AMP
Genome assembly (visualization)
46
GRCh38
16
hg19
Lab
188
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
225 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
single cell RNA-seq
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
coronary artery
2
35
1
right lobe of liver
3
1
1
1
tibial artery
5
1
pulmonary artery
2
cell line
HepG2
52
1
9
2
2
2
1
smooth muscle cell of the coronary artery
2
8
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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