Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
9
ChIP-seq
8
snATAC-seq
4
pCHi-C
1
RRBS
Assay category
36
DNA accessibility
19
Transcription
9
DNA binding
1
DNA methylation
Target of assay
7
control
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
8
January, 2021
3
January, 2019
3
November, 2018
1
February, 2020
1
July, 2019
1
June, 2019
Available data
87
bed narrowPeak
67
bam
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
69
Homo sapiens
Biosample type
53
tissue
10
primary cell
6
cell line
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
8
T1D
Genome assembly (visualization)
28
hg19
Lab
61
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
bigWig
BIOSAMPLE
ASSAY
69 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
1
1
cell line
GM12878
6
Download