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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
45
ATAC-seq
6
single cell RNA-seq
6
total RNA-seq
5
WGBS
3
Hi-C
3
pCHi-C
1
RNA microarray
Assay category
77
DNA binding
45
DNA accessibility
12
Transcription
5
DNA methylation
3
3D chromatin structure
Target of assay
44
control
33
histone
33
histone modification
22
broad histone mark
11
narrow histone mark
Date released
40
August, 2017
36
February, 2023
18
October, 2018
11
May, 2019
11
October, 2019
10
February, 2021
7
August, 2021
5
February, 2020
4
March, 2020
1
August, 2018
1
July, 2019
1
May, 2023
1
November, 2019
Available data
622
bam
bigWig
469
tsv
142
bed narrowPeak
89
bigBed narrowPeak
47
fastq
17
bed bed3+
16
bed broadPeak
15
bigBed broadPeak
14
tagAlign
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
2
hdf5
1
tar
Organism
145
Homo sapiens
Biosample type
128
tissue
10
cell line
7
primary cell
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
146
AMP
Genome assembly (visualization)
45
GRCh38
14
hg19
Lab
146
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
146 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RNA microarray
tissue
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
aorta
2
4
1
1
1
omental fat pad
8
1
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cell line
smooth muscle cell of the coronary artery
2
8
primary cell
endothelial cell of umbilical vein
5
2
in vitro differentiated cells
white fat cell
1
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