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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
35
ChIP-seq
9
Hi-C
7
single cell RNA-seq
5
RRBS
5
total RNA-seq
2
pCHi-C
1
WGBS
1
snATAC-seq
Assay category
44
DNA accessibility
35
DNA binding
12
Transcription
9
3D chromatin structure
6
DNA methylation
Target of assay
26
control
9
histone
9
histone modification
6
broad histone mark
3
narrow histone mark
Date released
35
February, 2023
13
August, 2017
12
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
6
July, 2019
6
March, 2020
5
February, 2020
2
June, 2019
2
May, 2022
Available data
237
bam
bigWig
189
bed narrowPeak
126
bigBed narrowPeak
77
tsv
59
bed broadPeak
46
bigBed broadPeak
45
bed bed3+
21
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
fastq
5
hic
4
bedpe bed3+
2
hdf5
1
tar
1
txt
Organism
108
Homo sapiens
Biosample type
88
tissue
10
cell line
10
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
43
GRCh38
17
hg19
Lab
108
AMP-T2D consortium
Audit category:
2
audit script error
1
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
108 results
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ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
RRBS
total RNA-seq
pCHi-C
WGBS
snATAC-seq
tissue
coronary artery
35
2
1
skeletal muscle tissue
9
1
4
1
aorta
2
1
4
1
1
tibial artery
5
1
gastrocnemius medialis
4
1
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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