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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
12
ATAC-seq
5
ChIP-seq
4
total RNA-seq
2
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
5
DNA binding
4
Transcription
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
broad histone mark
2
control
1
narrow histone mark
Date released
92
February, 2021
8
February, 2023
6
October, 2019
1
March, 2020
1
May, 2021
Available data
88
txt
86
bam
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
108
Homo sapiens
Biosample type
100
tissue
8
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
107
AMP
1
T1D
Genome assembly (visualization)
14
hg19
8
GRCh38
Lab
107
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
108 results
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RNA microarray
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
tissue
bone element
84
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 8 more…
primary cell
endothelial cell of umbilical vein
5
2
megakaryocyte
1
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