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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
71
DNA accessibility
55
Transcription
53
DNA methylation
28
DNA binding
6
3D chromatin structure
Target of assay
25
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
12
August, 2017
6
October, 2019
3
December, 2017
2
June, 2019
2
November, 2019
1
August, 2021
1
May, 2019
1
May, 2021
Available data
129
bam
bigWig
97
bed narrowPeak
72
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
28
Homo sapiens
Biosample type
22
primary cell
4
in vitro differentiated cells
2
cell line
Organ
120
liver
78
connective tissue
57
pancreas
54
adipose tissue
46
brain
28
epithelium
23
blood vessel
23
vasculature
20
heart
18
limb
13
kidney
12
musculature of body
11
nerve
9
artery
8
embryo
8
spleen
6
blood
6
bodily fluid
5
vein
4
gonad
4
ovary
3
eye
1
lymph node
Project
28
AMP
Lab
28
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
epithelial cell of proximal tubule
2
hepatocyte
1
+ See 2 more…
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
cell line
EndoC_BH1
2
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