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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
15
ChIP-seq
6
WGBS
Assay category
53
Transcription
15
DNA binding
6
DNA methylation
Target of assay
15
control
Date released
37
February, 2023
16
September, 2020
12
August, 2017
6
February, 2021
3
December, 2017
Available data
317
bam
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
74
Homo sapiens
Biosample type
71
primary cell
3
in vitro differentiated cells
Organ
114
pancreas
74
epithelium
72
liver
27
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
3
brain
2
musculature of body
Project
59
HPAP
15
AMP
Lab
59
Klaus Kaestner, Upenn
15
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ChIP-seq
WGBS
primary cell
pancreatic alpha cell
42
6
6
pancreatic beta cell
11
6
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
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