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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
44
ATAC-seq
26
total RNA-seq
9
pCHi-C
4
WGBS
2
Capture-C
2
RRBS
1
RNA microarray
Assay category
81
DNA binding
44
DNA accessibility
26
Transcription
6
DNA methylation
Target of assay
45
histone
45
histone modification
36
control
28
broad histone mark
17
narrow histone mark
Date released
60
August, 2017
45
February, 2023
22
October, 2019
18
October, 2018
5
February, 2021
4
June, 2019
3
August, 2021
3
February, 2020
2
July, 2019
2
March, 2020
1
August, 2018
1
May, 2021
1
May, 2023
1
November, 2019
1
November, 2020
Available data
600
bam
bigWig
483
tsv
108
bed narrowPeak
101
fastq
34
bigBed narrowPeak
31
bed bed3+
22
tagAlign
14
bed broadPeak
13
bigBed broadPeak
6
bed bed3
4
bed bedMethyl
4
bed bedgraph
4
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
168
Homo sapiens
Biosample type
119
tissue
40
in vitro differentiated cells
9
primary cell
1
stem cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
1
T1D
Genome assembly (visualization)
50
hg19
4
GRCh38
Lab
166
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
169 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RRBS
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
islet of Langerhans
3
1
14
4
retina
15
3
pigmented layer of retina
12
2
subcutaneous adipose tissue
10
1
1
+ See 3 more…
in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
retinal pigment epithelial cell
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
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