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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
71
ATAC-seq
23
ChIP-seq
22
total RNA-seq
7
pCHi-C
3
Hi-C
3
RRBS
2
WGBS
Assay category
115
Transcription
71
DNA accessibility
23
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
21
control
2
histone
2
histone modification
2
narrow histone mark
Date released
92
August, 2021
67
February, 2023
22
October, 2019
10
April, 2019
10
February, 2021
6
May, 2019
5
July, 2019
5
March, 2020
4
February, 2020
3
June, 2019
Available data
bigWig
224
bed narrowPeak
218
bam
173
tsv
100
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
224
Homo sapiens
Biosample type
209
tissue
10
cell line
5
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
43
GRCh38
41
hg19
Lab
224
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
BIOSAMPLE
ASSAY
224 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
RRBS
WGBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
2
heart right ventricle
17
2
1
1
islet of Langerhans
1
2
14
4
right cardiac atrium
18
1
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
retinal pigment epithelial cell
1
1
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