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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
43
ATAC-seq
20
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
WGBS
Assay category
96
Transcription
43
DNA accessibility
20
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
10
February, 2021
6
May, 2019
5
March, 2020
3
February, 2020
2
July, 2019
2
June, 2019
1
October, 2019
Available data
205
bam
bigWig
168
tsv
151
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
167
Homo sapiens
Biosample type
154
tissue
10
cell line
3
primary cell
Organ
276
pancreas
223
kidney
176
epithelium
167
heart
165
liver
110
connective tissue
101
bone element
80
vasculature
79
blood vessel
64
brain
62
adipose tissue
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
167
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
167
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigWig
assay_title!
WGBS
BIOSAMPLE
ASSAY
167 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
cardiac fibroblast
2
1
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