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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
16
ChIP-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
WGBS
1
RRBS
Assay category
96
Transcription
35
DNA accessibility
16
DNA binding
3
3D chromatin structure
3
DNA methylation
Target of assay
16
control
Date released
92
August, 2021
36
February, 2023
10
April, 2019
6
May, 2019
5
March, 2020
3
February, 2020
3
July, 2019
1
October, 2019
Available data
133
bed narrowPeak
132
bam
bigWig
111
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
156
Homo sapiens
Biosample type
156
tissue
10
cell line
3
primary cell
Organ
208
kidney
156
heart
132
pancreas
100
bone element
96
liver
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
63
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
156
AMP-T2D consortium
files.file_type!
bigWig
BIOSAMPLE
ASSAY
156 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
RRBS
tissue
coronary artery
35
2
1
heart left ventricle
18
6
1
1
2
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
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