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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
17
DNA binding
6
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
17
control
1
histone
histone modification
1
narrow histone mark
Date released
16
October, 2019
6
February, 2021
4
July, 2019
3
February, 2020
1
May, 2019
Available data
66
bam
44
bed narrowPeak
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
30
Homo sapiens
Biosample type
30
tissue
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
30
AMP-T2D consortium
files.file_type!
bigWig
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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