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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
1
Transcription
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
13
December, 2017
9
August, 2021
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
November, 2018
1
October, 2019
Available data
522
bam
bigWig
460
fastq
441
bed narrowPeak
358
bigBed narrowPeak
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
139
Homo sapiens
Biosample type
75
tissue
60
cell line
3
primary cell
1
in vitro differentiated cells
Organ
250
pancreas
174
kidney
168
epithelium
166
heart
139
liver
107
connective tissue
97
bone element
78
vasculature
77
blood vessel
63
adipose tissue
54
artery
52
brain
36
eye
28
limb
26
musculature of body
20
lung
14
blood
14
bodily fluid
12
skeleton
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
131
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
3
1
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
2
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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