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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
21
total RNA-seq
4
WGBS
2
RRBS
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
68
DNA binding
22
Transcription
6
DNA methylation
2
DNA accessibility
1
3D chromatin structure
Target of assay
48
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
36
August, 2017
23
May, 2020
20
May, 2022
13
December, 2017
2
July, 2019
2
March, 2020
1
August, 2021
1
February, 2020
1
February, 2021
1
October, 2019
Available data
315
bam
bigWig
159
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
100
Homo sapiens
Biosample type
96
tissue
cell line
3
primary cell
1
in vitro differentiated cells
Organ
287
pancreas
216
kidney
194
epithelium
159
heart
114
connective tissue
101
bone element
100
liver
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
80
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
biosample_type!
cell line
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
63
20
3
1
1
1
1
right lobe of liver
3
1
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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