Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
30
total RNA-seq
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
WGBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
89
DNA binding
31
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
84
control
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
655
bam
bigWig
437
fastq
bed narrowPeak
352
bigBed narrowPeak
174
tsv
66
tagAlign
63
bed broadPeak
63
bigBed broadPeak
10
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
131
Homo sapiens
Biosample type
68
cell line
60
tissue
2
primary cell
1
in vitro differentiated cells
Organ
256
pancreas
197
epithelium
159
kidney
131
liver
126
heart
93
bone element
63
brain
51
connective tissue
38
vasculature
37
blood vessel
28
eye
25
limb
24
adipose tissue
20
lung
15
musculature of body
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
4
hg19
Lab
94
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bigWig
bed narrowPeak
month_released!
August, 2017
BIOSAMPLE
ASSAY
131 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
STARR-seq
RRBS
WGBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
52
9
2
2
2
1
tissue
liver
32
20
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
Download