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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
31
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
131
DNA binding
32
Transcription
6
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
106
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
11
October, 2019
2
February, 2020
2
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
November, 2018
Available data
723
bam
bigWig
bed narrowPeak
465
fastq
384
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
179
Homo sapiens
Biosample type
108
tissue
68
cell line
2
primary cell
1
in vitro differentiated cells
Organ
285
pancreas
209
epithelium
167
liver
159
kidney
126
heart
111
connective tissue
93
bone element
64
adipose tissue
63
brain
38
vasculature
37
blood vessel
28
eye
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
179
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
142
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
files.file_type!
bigWig
bed narrowPeak
BIOSAMPLE
ASSAY
179 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
tibial nerve
11
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
2
2
1
primary cell
hepatocyte
1
1
in vitro differentiated cells
hepatocyte
1
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