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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
2
RRBS
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
30
Transcription
6
DNA methylation
3
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
680
bam
bigWig
465
fastq
440
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
166
Homo sapiens
Biosample type
95
tissue
67
cell line
3
primary cell
1
in vitro differentiated cells
Organ
317
pancreas
217
epithelium
215
kidney
166
liver
159
heart
109
connective tissue
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
28
musculature of body
25
limb
20
lung
14
blood
14
bodily fluid
12
nerve
9
bone element
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
month_released!
February, 2021
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
RRBS
STARR-seq
pCHi-C
ATAC-seq
DNase-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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