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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
100
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
95
control
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
24
May, 2020
20
May, 2022
18
August, 2021
16
August, 2017
13
December, 2017
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
602
bam
bigWig
421
fastq
361
bed narrowPeak
323
bigBed narrowPeak
174
tsv
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
149
Homo sapiens
Biosample type
76
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
112
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
spinal cord
target.investigated_as!
histone
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
43
20
3
1
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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