Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ATAC-seq
2
Hi-C
2
RRBS
1
ChIP-seq
1
pCHi-C
Assay category
2
3D chromatin structure
2
DNA accessibility
2
DNA methylation
1
DNA binding
Target of assay
1
control
Date released
2
August, 2017
2
February, 2021
1
August, 2021
1
July, 2019
1
March, 2020
1
October, 2019
Available data
bigWig
585
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
8
Homo sapiens
Biosample type
3
cell line
3
tissue
2
primary cell
Organ
51
pancreas
28
eye
26
epithelium
22
connective tissue
13
heart
12
bone element
12
skeleton
12
vasculature
11
blood vessel
8
artery
8
liver
6
limb
6
musculature of body
5
brain
5
kidney
3
adipose tissue
2
vein
1
embryo
1
pericardium
Project
8
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
8 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
RRBS
ChIP-seq
pCHi-C
cell line
HepG2
1
1
1
tissue
liver
1
1
1
primary cell
Liver fetal (hepatocyte)
1
hepatocyte
1
Download