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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
4
WGBS
3
pCHi-C
2
ATAC-seq
2
Hi-C
2
RRBS
1
DNase-seq
1
single cell RNA-seq
1
total RNA-seq
Assay category
116
DNA binding
6
DNA methylation
3
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
91
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
13
December, 2017
3
February, 2021
2
July, 2019
2
March, 2020
1
August, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
681
bam
bigWig
465
fastq
407
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
132
Homo sapiens
Biosample type
76
tissue
52
cell line
3
primary cell
1
in vitro differentiated cells
Organ
169
heart
132
liver
113
pancreas
111
connective tissue
100
bone element
81
vasculature
80
blood vessel
75
epithelium
66
adipose tissue
64
brain
56
artery
55
eye
32
kidney
31
limb
28
musculature of body
16
skeleton
12
nerve
9
spleen
8
embryo
7
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
urinary bladder
Project
132
AMP
Genome assembly (visualization)
7
hg19
3
GRCh38
Lab
132
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
132 results
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Clear Filters
ChIP-seq
WGBS
pCHi-C
ATAC-seq
Hi-C
RRBS
DNase-seq
single cell RNA-seq
total RNA-seq
tissue
liver
63
3
1
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
48
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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