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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
30
total RNA-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
128
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
102
control
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
18
December, 2017
3
February, 2018
3
February, 2021
2
July, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
717
bam
bigWig
492
fastq
455
bed narrowPeak
358
bigBed narrowPeak
188
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
16
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
177
Homo sapiens
Biosample type
96
tissue
69
cell line
9
in vitro differentiated cells
3
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
9
hg19
4
GRCh38
Lab
140
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
177 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
52
9
2
2
1
2
1
in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
hepatocyte
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
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