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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ATAC-seq
53
total RNA-seq
47
WGBS
22
ChIP-seq
6
MeRIP-seq
4
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
56
DNA accessibility
53
Transcription
47
DNA methylation
22
DNA binding
4
3D chromatin structure
Target of assay
24
control
3
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
80
May, 2022
38
February, 2023
17
May, 2021
16
September, 2020
12
August, 2017
7
October, 2019
6
February, 2021
6
November, 2020
4
November, 2019
3
October, 2022
2
August, 2021
Available data
260
bam
258
fastq
bigWig
142
tsv
91
bed narrowPeak
80
zippedFastqFolder
29
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
190
Homo sapiens
Biosample type
154
primary cell
tissue
36
cell line
1
in vitro differentiated cells
Organ
208
epithelium
191
pancreas
73
liver
48
connective tissue
18
vasculature
17
blood vessel
15
kidney
14
blood
14
bodily fluid
13
heart
10
artery
8
embryo
7
vein
3
musculature of body
2
eye
1
adipose tissue
1
bone element
1
bone marrow
1
brain
1
mammary gland
Project
142
HPAP
49
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
142
Klaus Kaestner, Upenn
43
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
3
audit script error
files.file_type!
bigWig
biosample_type!
tissue
BIOSAMPLE
ASSAY
191 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
MeRIP-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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